PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID FANhyb_rscf00004500.1.g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YB
Protein Properties Length: 216aa    MW: 23420.9 Da    PI: 7.6988
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
FANhyb_rscf00004500.1.g00001.1genomekazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB1794.2e-5626121297
                           NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyv 80 
                                     +eqdrflPianvsrimkk lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv
  FANhyb_rscf00004500.1.g00001.1  26 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYV 104
                                     89***************************************************************************** PP

                           NF-YB  81 eplkvylkkyrelegek 97 
                                      plk yl+kyre+egek
  FANhyb_rscf00004500.1.g00001.1 105 GPLKGYLNKYRETEGEK 121
                                     ***************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.5E-5524145IPR009072Histone-fold
SuperFamilySSF471131.59E-4228144IPR009072Histone-fold
PfamPF008081.9E-273195IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.8E-195977No hitNo description
PROSITE patternPS0068506278IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006153.8E-197896No hitNo description
PRINTSPR006153.8E-1997115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSGKRNQTSP VGSPLSGGNV SDGGSKEQDR FLPIANVSRI MKKSLPANAK ISKEAKETVQ  60
ECVSEFISFI TGEASDKCQR EKRKTINGDD LLWAMTTLGF ENYVGPLKGY LNKYRETEGE  120
KNSMARGQED HEHSSHDDHH INNNKKQLQN GASGINTIGT NKVDLLSNGG FYSLGGQQMS  180
APKGFGESGR VIGYGDQNLV TYGDGSANHL HNGIGW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-4826116292Transcription factor HapC (Eurofung)
4g92_B4e-4826116292Transcription factor HapC (Eurofung)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004304851.11e-154PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotO233104e-64NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLM5W0478e-93M5W047_PRUPE; Uncharacterized protein
STRINGGLYMA08G14931.11e-82(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.11e-64nuclear factor Y, subunit B3